Python Development API

These pages contain documentation automatically generated from docstrings within the augur codebase. They are intended for people developing augur or importing augur into their python scripts. If you are using augur as a command line program, then please see the using augur section.

• augur package
  • Submodules
    • augur.align module
    • augur.ancestral module
    • augur.clades module
    • augur.distance module
    • augur.export module
    • augur.export_v1 module
    • augur.export_v2 module
    • augur.filenames module
    • augur.filter module
    • augur.frequencies module
    • augur.frequency_estimators module
    • augur.import_beast module
    • augur.lbi module
    • augur.mask module
    • augur.parse module
    • augur.reconstruct_sequences module
    • augur.refine module
    • augur.sequence_traits module
    • augur.titer_model module
    • augur.titers module
    • augur.traits module
    • augur.translate module
    • augur.tree module
    • augur.utils module
    • augur.validate module
    • augur.validate_export module
    • augur.version module