augur.frequencies module

infer frequencies of mutations or clades

augur.frequencies.format_frequencies(freq)
augur.frequencies.numeric_date(date)

Converts the given date string to a float. date may be given as a number (a float) with year as the integer part, or in the YYYY-MM-DD (ISO 8601) syntax. >>> numeric_date(“2020.42”) 2020.42 >>> numeric_date(“2020-06-04”) 2020.42486…

augur.frequencies.register_arguments(parser)
augur.frequencies.run(args)