augur.util_support.metadata_file module

class augur.util_support.metadata_file.MetadataFile(fname, query=None, as_data_frame=False)

Bases: object

Represents a CSV or TSV file containing metadata

The file must contain exactly one of a column named strain or name, which is used to match metadata with samples.

check_metadata_duplicates()

property columns

find_key_type()

property metadata

Return list of dicts representing the metadata in the file.

If a query was supplied, apply it.

parse_file

read()