augur package
The top-level augur command which dispatches to subcommands.
- augur.add_version_alias(parser)
Add –version as a (hidden) alias for the version command.
It’s not uncommon to blindly run a command with –version as the sole argument, so its useful to make that Just Work.
- augur.make_parser()
- augur.run(argv)
Subpackages
Submodules
- augur.align module
- augur.ancestral module
- augur.clades module
- augur.distance module
- augur.export module
- augur.export_v1 module
- augur.export_v2 module
- augur.filenames module
- augur.filter module
- augur.frequencies module
- augur.frequency_estimators module
- augur.import module
- augur.index module
- augur.io module
- augur.lbi module
- augur.mask module
- augur.measurements module
- augur.parse module
- augur.reconstruct_sequences module
- augur.refine module
- augur.sequence_traits module
- augur.titer_model module
- augur.titers module
- augur.traits module
- augur.translate module
- augur.tree module
- augur.utils module
- augur.validate module
- augur.validate_export module
- augur.version module