augur.filter module

Filter and subsample a sequence set.

augur.filter.read_priority_scores(fname)

augur.filter.read_vcf(compressed, input_file)

augur.filter.register_arguments(parser)

augur.filter.run(args)

filter and subsample a set of sequences into an analysis set

augur.filter.write_vcf(compressed, input_file, output_file, dropped_samps)