augur
5.2.0
Table of contents
Installation
Using Augur
Augur command
Examples of Augur in the wild
Environment variables
Development (Python API)
Authors
augur
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Using Augur
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Using Augur
¶
Augur command
Sub-commands:
parse
filter
mask
align
tree
refine
ancestral
translate
reconstruct-sequences
clades
traits
sequence-traits
lbi
distance
titers
frequencies
export
validate
version
Examples of Augur in the wild
Nextstrain tutorials
Nextstrain pathogens
Nextstrain community
Environment variables
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v: 5.2.0
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stable
5.2.0
5.1.1
5.1.0
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