Frequently Asked Questions¶
Got questions? Hopefully, we’ve got answers! Here, we’ve gathered up some of the most common questions and problems users run into.
- Preparing Your Metadata
- Finding a
translate
andalign
reference file - Labeling
clades
- Sharing your analysis
- Importing BEAST MCC trees into augur
- Adding Custom Trait Colors
- Adding Custom Lat-Long Data
- Specifying `refine` rates
- Using Augur and Snakemake
- Using VCF Input
- Using Fasta Input
- Inferring Sequence Traits (like Drug Resistance)