Frequently Asked Questions

Got questions? Hopefully, we’ve got answers! Here, we’ve gathered up some of the most common questions and problems users run into.

• Preparing Your Metadata
• Finding a translate and align reference file
• Labeling clades
• Sharing your analysis
• Importing BEAST MCC trees into augur
• Adding Custom Trait Colors
• Adding Custom Lat-Long Data
• Specifying `refine` rates
• Using Augur and Snakemake
• Using VCF Input
• Using Fasta Input
• Inferring Sequence Traits (like Drug Resistance)