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Auspice version: v2.22.1

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Table of contents

Auspice: An Open-source Interactive Tool for Visualising Phylogenomic Data
Introduction
- Install Auspice
- How to Run Auspice
Advanced Functionality
Customising the Auspice Client
- Client Customisation API
- Requests Made from the Client
Auspice servers
- Server API
- Authentication
Releases

Auspice

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Revision 08133c2a.

Hadfield et al., Nextstrain: real-time tracking of pathogen evolution , Bioinformatics (2018)

Nextstrain is built by

Trevor Bedford ,

Richard Neher ,

James Hadfield ,

Emma Hodcroft ,

Thomas Sibley ,

John Huddleston ,

Jover Lee ,

Kairsten Fay ,

Sidney Bell ,

Colin Megill ,

Barney Potter ,

Pavel Sagulenko ,

Charlton Callender ,

Misja Ilcisin ,

Louise Moncla ,

Allison Black ,

Anderson Brito ,

Nate Grubaugh

All source code is freely available under the terms of the GNU Affero General Public License. Screenshots may be used under a CC-BY-4.0 license and attribution to nextstrain.org must be provided.

This work is made possible by the open sharing of genetic data by research groups from all over the world. We gratefully acknowledge their contributions. Special thanks to Kristian Andersen, David Blazes, Peter Bogner, Matt Cotten, Ana Crisan, Gytis Dudas, Vivien Dugan, Karl Erlandson, Nuno Faria, Jennifer Gardy, Becky Kondor, Dylan George, Ian Goodfellow, Betz Halloran, Christian Happi, Jeff Joy, Paul Kellam, Philippe Lemey, Nick Loman, Sebastian Maurer-Stroh, Oliver Pybus, Andrew Rambaut, Colin Russell, Pardis Sabeti, Katherine Siddle, Kristof Theys, Dave Wentworth, Shirlee Wohl and Nathan Yozwiak for comments, suggestions and data sharing.

Revision 08133c2a.

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