nextstrain remote download
Downloads pathogen JSON data files or Markdown narratives from a remote source.
Source URLs specify the file(s) to download:
nextstrain remote download s3://my-bucket/some/prefix/data.json
will download “data.json” into the current directory.
Recursive downloads are supported for downloading multiple files:
nextstrain remote download –recursive s3://my-bucket/some/prefix/
will download all files under “some/prefix/” into the current directory.
See nextstrain remote –help for more information on remote sources.
usage: nextstrain remote download [-h] [--recursively]
<s3://bucket-name> [<path>]
Positional Arguments
- <s3://bucket-name>
Remote file path as a URL
- <path>
Local directory to save files in. May be a local filename to use if the remote path points to a single file.
Default: .
Named Arguments
- --recursively, -r
Download all files with the given remote path prefix
Default: False