nextstrain remote

Upload, download, and manage Nextstrain files on remote sources.

Remote sources host the Auspice JSON data files and Markdown narratives that are fetched by nextstrain.org or standalone instances of Auspice.

Currently only Amazon S3 buckets (s3://…) are supported as the remote source, but others can be added in the future.

Credentials for authentication should generally be provided by environment variables specific to each source.

  • AWS_ACCESS_KEY_ID

  • AWS_SECRET_ACCESS_KEY

More information at:

A persistent credentials file, ~/.aws/credentials, is also supported:

usage: nextstrain remote [-h] {upload,download,list,ls,delete,rm} ...