nextstrain remote

Upload, download, and manage remote datasets and narratives. is the primary remote source/destination, but Amazon S3 buckets are also supported and necessary for some use cases. [1]

Remote sources/destinations are specified using URLs starting with and s3://<bucket-name>/. remote URLs represent datasets and narratives each as a whole, where datasets may consist of multiple files (the main JSON file + optional sidecar files) when uploading/downloading. Amazon S3 remote URLs represent dataset and narrative files individually.

For more details on using each remote, see their respective documentation pages:

For more information on dataset (Auspice JSON) and narrative (Markdown) files, see Data formats.

usage: nextstrain remote [-h] {upload,download,list,ls,delete,rm} ...