Reconstruct alignments from mutations inferred on the tree
- augur.reconstruct_sequences.get_sequence(pseq, muts)
reconstruct a child sequence from that of its parent and the mutations
pseq (str) – sequence of the parent as string, won’t be changed!
muts (list) – mutations of the type K135T where K is the parental state, 135 is the position in 1-based numbering, and T is the new state
- Return type:
- augur.reconstruct_sequences.load_alignments(sequence_files, gene_names)