SARS-CoV-2 Workflow
version v11
Table of contents
Getting started with analysis
Setup and installation
Preparing your data
Orientation: so, what does Nextstrain
do
?
Overview of this repository (i.e., what do these files do?)
Running the analysis
Customizing analysis
Customizing your Auspice visualization
Getting started with visualization & interpretation
Visualizing and sharing results
Guidance for interpretation
Nextstrain Narratives
Reference material
Running an analysis starting from multiple inputs
Overview of remote nCoV files (intermediate build assets)
Configuration parameters for Nextstrain SARS-CoV-2 workflow
Standard Nextstrain metadata fields
Clade Naming & Definitions
Data Submitter’s FAQ
Change Log
Video tutorial walkthrough
Stuck? Ask us on the discussion board. We're happy to help!
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