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  • Introduction

Web APIs

  • Charon API
  • RESTful API

Internals

  • Authorization
  • Sessions
  • URL Routing
  • Infrastructure
  • Terraform
  • Glossary
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Warning

This is reference documentation for nextstrain.org developers. If you’re just getting started with Nextstrain, please see our general documentation instead.

Web APIs

  • Charon API
    • Serverside Handlers
    • Tests
  • RESTful API
    • Synopsis
    • Authentication
    • Media types
    • Versioning
    • Methods
    • Conditional requests
    • Endpoints
    • Motivation

Internals

  • Authorization
    • Policies
    • User roles
    • Object tags
    • Actions
    • Enforcement
  • Sessions
    • Contents
    • Storage
    • Lifetime
    • Security
    • Environment variables
  • URL Routing
    • Server-side routes
  • Infrastructure
    • Domains
    • Heroku
    • AWS
    • S3 buckets
    • EC2 instances
    • Cognito
    • DNS
    • GitHub
    • CI
  • Terraform
    • Configurations
    • Setup
    • Authoring changes
    • Previewing changes
    • Deploying changes
    • Linting
    • Importing resources
    • Outputs
    • Security
    • See also
  • Glossary
Next

Revision 0f249617.

Hadfield et al., Nextstrain: real-time tracking of pathogen evolution , Bioinformatics (2018)

The core Nextstrain team is

Trevor Bedford , Richard Neher , Ivan Aksamentov , Jennifer Chang , James Hadfield , Emma Hodcroft , John Huddleston , Jover Lee , Victor Lin , Cornelius Roemer , Thomas Sibley

Please see the team page for more details.


All source code for Nextstrain is freely available under the terms of an open-source license, typically AGPL-3.0 or MIT. Refer to specific projects for details. Screenshots may be used under a CC-BY-4.0 license and attribution to nextstrain.org must be provided.
This work is made possible by the open sharing of genetic data by research groups from all over the world. We gratefully acknowledge their contributions. Special thanks to Kristian Andersen, Josh Batson, David Blazes, Jesse Bloom, Peter Bogner, Anderson Brito, Matt Cotten, Ana Crisan, Tulio de Oliveira, Gytis Dudas, Vivien Dugan, Karl Erlandson, Nuno Faria, Jennifer Gardy, Nate Grubaugh, Becky Kondor, Dylan George, Ian Goodfellow, Betz Halloran, Christian Happi, Jeff Joy, Paul Kellam, Philippe Lemey, Nick Loman, Duncan MacCannell, Erick Matsen, Sebastian Maurer-Stroh, Placide Mbala, Danny Park, Oliver Pybus, Andrew Rambaut, Colin Russell, Pardis Sabeti, Katherine Siddle, Kristof Theys, Dave Wentworth, Shirlee Wohl and Cecile Viboud for comments, suggestions and data sharing.

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© Copyright 2022, Trevor Bedford and Richard Neher
Revision 0f249617.

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