nextstrain deploy

Uploads (deploys) a set of built pathogen JSON data files or Markdown narratives to a remote source.

The nextstrain deploy command is an alias for nextstrain remote upload.

Source URLs support optional path prefixes if you want your local filenames to be prefixed on the remote. For example:

nextstrain remote upload s3://my-bucket/some/prefix/ auspice/zika*.json

will upload files named “some/prefix/zika*.json”.

See nextstrain remote –help for more information on remote sources.

usage: nextstrain deploy [-h] <s3://bucket-name> <file.json> [<file.json> ...]

Positional Arguments


Remote path as a URL, with optional key/path prefix


Files to upload, typically Auspice JSON data files