nextstrain remote upload

Uploads (deploys) a set of built pathogen JSON data files or Markdown narratives to a remote source.

Source URLs support optional path prefixes if you want your local filenames to be prefixed on the remote. For example:

nextstrain remote upload s3://my-bucket/some/prefix/ auspice/zika*.json

will upload files named “some/prefix/zika*.json”.

See nextstrain remote –help for more information on remote sources.

usage: nextstrain remote upload [-h]
                                <s3://bucket-name> <file.json>
                                [<file.json> ...]

Positional Arguments


Remote path as a URL, with optional key/path prefix


Files to upload, typically Auspice JSON data files