Sequence data
Nextclade CLI: Positional argument(s) or stdin
if no positional arguments provided.
Nextclade Web: accepted in “Provide sequences” drag & drop box. A remote URL is also accepted in input-fasta
URL parameter.
Accepted formats: FASTA.
A set of viral nucleotide sequences to be analyzed. Also referred to as query sequences.
These sequences must use a DNA alphabet (U
/Uracil is not accepted at the moment).
However, ambiguous IUPAC characters are allowed.
Note: each id must start with >
, plain text without header is not accepted.
💡 Nextclade CLI supports file compression and reading from standard input. See section Compression, stdin for more details.