Creating a pathogen repository

This series of tutorials explains how to create a Nextstrain pathogen repository. These tutorials explore creating workflows in Nextstrain pathogen repositories that are more complex than the example Zika workflow covered in the earlier tutorial.


You only need to create a new pathogen repository if it does not already exist or you do not want to use an existing Nextstrain pathogen repository.

The tutorials use the Nextstrain pathogen-repo-guide as the starting point for creating a pathogen repository. Each one covers an individual workflow within the repository.

Table of contents