These tutorials will walk you through the process of running a basic genomic surveillance workflow using SARS-CoV-2 data. We’ve created these resources with the goal of enabling Departments of Public Health to start using Nextstrain to understand their SARS-CoV-2 genomic data within 1-2 hours.
At the end, you will be able to:
create phylogenetic trees of SARS-CoV-2 genomes from different sources including GISAID and Nextstrain-curated GenBank data
visualize the resulting trees in Auspice
define subsampling logic for your own genomic epidemiological analysis
If you prefer to learn about the workflow through videos, see the demo videos.