Setup and installation
The following steps will prepare you to run complete analyses of SARS-CoV-2 data by installing required software and running a simple example workflow.
Table of Contents
Register for a GISAID account
Some tutorials rely on data downloaded from GISAID. If you do not already have one, register for a GISAID account now. Registration may take a few days.
Install Nextstrain components
Download the ncov workflow
Use Git to download a copy of the ncov repository containing the workflow and this tutorial.
git clone https://github.com/nextstrain/ncov.git