augur.curate.parse_genbank_location module

Parses GenBank’s ‘location’ field of the NDJSON record to 3 separate fields: ‘country’, ‘division’, and ‘location’.

Checks that a record is from GenBank by verifying that the ‘database’ field has a value of “GenBank” or “RefSeq”.

augur.curate.parse_genbank_location.parse_location(record, location_field_name)

Return type:

dict

augur.curate.parse_genbank_location.register_parser(parent_subparsers)

Return type:

_SubParsersAction

augur.curate.parse_genbank_location.run(args, records)

Return type:

Generator[dict, None, None]