Augur subcommandsļ
Youāll find documentation for all the augur subcommands below.
Weāre in the process of adding examples and more extensive documentation for each command, but at a minimum each subcommand will contain autogenerated documentation similar to that seen by running --help.
- augur parse
- augur curate
- augur merge
- augur index
- augur filter
- augur mask
- augur align
- augur tree
- augur refine
- augur ancestral
- augur translate
- augur reconstruct-sequences
- augur clades
- augur traits
- augur sequence-traits
- augur lbi
- augur distance
- augur titers
- augur frequencies
- augur export
- augur validate
- augur version
- augur import
- augur measurements
- augur read-file
- augur write-file