augur.import_ package

Import analyses into augur pipeline from other systems

augur.import_.register_parser(parent_subparsers)

Submodules

• augur.import_.beast module
  • calc_tree_dates()
  • collect_node_data()
  • compute_entropies_for_discrete_traits()
  • fake_alignment()
  • find_most_recent_tip()
  • get_root_date_offset()
  • parse_beast_tree()
  • parse_nexus()
  • print_what_to_do_next()
  • register_parser()
  • run()
  • summarise_parsed_traits()