Developer API

Warning

If you are importing Augur in your Python scripts, use the public API.

While anything in this API can be imported from an external script, changes are not guaranteed to be versioned or included in the changelog.

These pages contain documentation automatically generated from docstrings within the Augur codebase. They are intended for people developing Augur.

• augur package
  • add_version_alias()
  • make_parser()
  • run()
  • Subpackages
    • augur.curate package
    • augur.data package
    • augur.dates package
    • augur.filter package
    • augur.import_ package
    • augur.io package
    • augur.measurements package
    • augur.util_support package
  • Submodules
    • augur.align module
    • augur.ancestral module
    • augur.argparse_ module
    • augur.clades module
    • augur.debug module
    • augur.distance module
    • augur.errors module
    • augur.export module
    • augur.export_v1 module
    • augur.export_v2 module
    • augur.frequencies module
    • augur.frequency_estimators module
    • augur.index module
    • augur.lbi module
    • augur.mask module
    • augur.merge module
    • augur.parse module
    • augur.read_file module
    • augur.reconstruct_sequences module
    • augur.refine module
    • augur.sequence_traits module
    • augur.titer_model module
    • augur.titers module
    • augur.traits module
    • augur.translate module
    • augur.tree module
    • augur.types module
    • augur.utils module
    • augur.validate module
    • augur.validate_export module
    • augur.version module
    • augur.write_file module